miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|237603395|gb|GO877542.1|GO877542 TTTTTTTTTTTTTTACCAACCTCAAAGGATACCAGTTCATTGTTCTACTGAAGCCTACATACAGATTATAGCTCCATTAG
TAAGATCCCTACAGTAGCAGCACCTACAATAGCTGTCAATACACTGGCCTCACTTCTGAAATGAGACTTGTACTGAACCA
GCATGCCTTTCCATATGCAAATGATTTGCCAAAAAATTCCTACTCCCTCCGTTCCATAATAAAGGTCATGGTTTTAGTTC
AAATCTAAACTAAAACCATGAAACTTATTATGGATCAGAGAGAGTATTTTTTGTCCCCGAATAGAGTACCGAATATACAG
CACTGGCCTAACATAGGACGATGGTTTTAGCGAGGCACCGAAACACTATGTTTGATTCGCACCTTGTTACCGAGCCCAAT
GGTTTGGCTGTTCCAGATAGGTAGGGCTGGACAGACAGTACAGAACCTTAGCGTCTTGCATTAATCACAGTATCCTCAAA
CCGAGGGGAAGAACTTGTTCAGGTTGAATGGCAGGGAATAGAACTCCTCGCTCCTTGTGTCGGTCCTGTATGACCTGAAC
TTATCCCACCAGTGATACCCACGGTCTTTCCTGACAGTAGCCTCATGCCTGTGAAGGGTGTTGTCCAGCACGTATGCAAC
AATGCCACCAACAAAAGCCTTTGACGAGAAGAGCACGTTCACCATGTCATTGAACCATCTTGCGCGAGTGTGGACAGGGC
CAAAACCAGCAACAGATGTGTACTCATTGAAGTACTGAGGAATTGAAAGGCCCAGGAACAGTGAGAACTCCAGGATGAAC
TTGGTTCTGAAGCTATTGAGGTTGCAGAACTGAGGGAAACCAAGCCCAGCAGAATCAACATATGCAAAGAACACGCAGTA
GAGAGCAGCAAATATTGGTGCAGGTATGATGCAAAGACAGCTCCAAATTTTCCAGAATAGAGAAGAATATCATAAAACCA
GCTGATATCTGCACACTCTTCGCTACAAACGTGTCAAGCTAGCACTCGGCATTT




Most similar to sp|Q27GI3|NAT6_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q27GI3|NAT6_ARATH Nucleobase-ascorbate transporter 6
           OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2
          Length = 532

 Score =  246 bits (627), Expect(2) = 2e-66
 Identities = 113/157 (71%), Positives = 132/157 (84%)
 Frame = -3

Query: 949 YSSLFWKIWSCLCIIPAPIFAALYCVFFAYVDSAGLGFPQFCNLNSFRTKFILEFSLFLG 770
           + S+  K  +    IPAPI AALYC+FFAYV + GL F QFCNLNSFRTKFIL FS+FLG
Sbjct: 376 FFSILGKFGAVFASIPAPIIAALYCLFFAYVGAGGLSFLQFCNLNSFRTKFILGFSVFLG 435

Query: 769 LSIPQYFNEYTSVAGFGPVHTRARWFNDMVNVLFSSKAFVGGIVAYVLDNTLHRHEATVR 590
           LSIPQYFNEYT++ G+GPVHT ARWFNDMVNV FSS+ FV G VA+ LDNTLH+ ++++R
Sbjct: 436 LSIPQYFNEYTAIKGYGPVHTGARWFNDMVNVPFSSEPFVAGSVAFFLDNTLHKKDSSIR 495

Query: 589 KDRGYHWWDKFRSYRTDTRSEEFYSLPFNLNKFFPSV 479
           KDRG HWWDKFRS++ DTRSEEFYSLPFNLNK+FPSV
Sbjct: 496 KDRGKHWWDKFRSFKGDTRSEEFYSLPFNLNKYFPSV 532



 Score = 28.9 bits (63), Expect(2) = 2e-66
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = -2

Query: 974 VQISAGFMIFFSIL 933
           VQI+AGFMIFFSIL
Sbjct: 367 VQIAAGFMIFFSIL 380


>sp|Q8RWE9|NAT5_ARATH Nucleobase-ascorbate transporter 5
           OS=Arabidopsis thaliana GN=NAT5 PE=2 SV=1
          Length = 528

 Score =  234 bits (598), Expect(2) = 2e-63
 Identities = 106/157 (67%), Positives = 129/157 (82%)
 Frame = -3

Query: 949 YSSLFWKIWSCLCIIPAPIFAALYCVFFAYVDSAGLGFPQFCNLNSFRTKFILEFSLFLG 770
           + S+  K  +    IP+PI AALYC+FFAYV + GL   QFCNLNSFRT FIL FS+FLG
Sbjct: 372 FFSILGKFGAVFASIPSPIIAALYCLFFAYVGAGGLSLLQFCNLNSFRTLFILGFSIFLG 431

Query: 769 LSIPQYFNEYTSVAGFGPVHTRARWFNDMVNVLFSSKAFVGGIVAYVLDNTLHRHEATVR 590
           LSIPQYFNE+T++ G+GPVHT ARWFNDMVNV FSSKAFVGG VAY+LD TLH+ + ++R
Sbjct: 432 LSIPQYFNEHTAIKGYGPVHTGARWFNDMVNVPFSSKAFVGGCVAYLLDTTLHKKDGSIR 491

Query: 589 KDRGYHWWDKFRSYRTDTRSEEFYSLPFNLNKFFPSV 479
           KDRG HWWD+F +++ D R+EEFY+LPFNLNK+FPSV
Sbjct: 492 KDRGKHWWDRFWTFKNDPRTEEFYALPFNLNKYFPSV 528



 Score = 30.0 bits (66), Expect(2) = 2e-63
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -2

Query: 974 VQISAGFMIFFSIL 933
           VQISAGFMIFFSIL
Sbjct: 363 VQISAGFMIFFSIL 376


>sp|Q0WPE9|NAT7_ARATH Nucleobase-ascorbate transporter 7
           OS=Arabidopsis thaliana GN=NAT7 PE=2 SV=2
          Length = 538

 Score =  225 bits (573), Expect(2) = 2e-60
 Identities = 103/157 (65%), Positives = 126/157 (80%)
 Frame = -3

Query: 949 YSSLFWKIWSCLCIIPAPIFAALYCVFFAYVDSAGLGFPQFCNLNSFRTKFILEFSLFLG 770
           + S+  K  +    IPAP+ AAL+C+FFAYV + GL   QFCNLNSFRTKFIL FS+F+G
Sbjct: 382 FFSILGKFGAIFASIPAPVVAALHCLFFAYVGAGGLSLLQFCNLNSFRTKFILGFSVFMG 441

Query: 769 LSIPQYFNEYTSVAGFGPVHTRARWFNDMVNVLFSSKAFVGGIVAYVLDNTLHRHEATVR 590
           LSIPQYFN+YT+V  +GPVHT ARWFNDM+NV FSSKAFV GI+A+ LD T+   ++  R
Sbjct: 442 LSIPQYFNQYTAVNKYGPVHTHARWFNDMINVPFSSKAFVAGILAFFLDVTMSSKDSATR 501

Query: 589 KDRGYHWWDKFRSYRTDTRSEEFYSLPFNLNKFFPSV 479
           KDRG  WWD+F S+++DTRSEEFYSLPFNLNK+FPSV
Sbjct: 502 KDRGMFWWDRFMSFKSDTRSEEFYSLPFNLNKYFPSV 538



 Score = 30.0 bits (66), Expect(2) = 2e-60
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -2

Query: 974 VQISAGFMIFFSIL 933
           VQISAGFMIFFSIL
Sbjct: 373 VQISAGFMIFFSIL 386


>sp|Q8VZQ5|NAT8_ARATH Nucleobase-ascorbate transporter 8
           OS=Arabidopsis thaliana GN=NAT8 PE=2 SV=1
          Length = 539

 Score =  204 bits (519), Expect(2) = 1e-53
 Identities = 94/156 (60%), Positives = 120/156 (76%)
 Frame = -3

Query: 949 YSSLFWKIWSCLCIIPAPIFAALYCVFFAYVDSAGLGFPQFCNLNSFRTKFILEFSLFLG 770
           + S+  K  +    IPAPI AALYC+FF+YV + GL   QFCNLNSFRTKFIL FS+F+G
Sbjct: 383 FFSILGKFGAIFASIPAPIVAALYCLFFSYVGAGGLSLIQFCNLNSFRTKFILGFSIFMG 442

Query: 769 LSIPQYFNEYTSVAGFGPVHTRARWFNDMVNVLFSSKAFVGGIVAYVLDNTLHRHEATVR 590
           LSIPQYF +YT++  +GPV T A WFN+++NV FSSKAFV GI+A+ LD TL   + T +
Sbjct: 443 LSIPQYFYQYTTLETYGPVRTSATWFNNIINVPFSSKAFVSGILAFFLDTTLPPKDKTTK 502

Query: 589 KDRGYHWWDKFRSYRTDTRSEEFYSLPFNLNKFFPS 482
           KDRG  WW +F+S+++D RSEEFYSLP NL+K+FPS
Sbjct: 503 KDRGLVWWKRFKSFQSDNRSEEFYSLPLNLSKYFPS 538



 Score = 28.1 bits (61), Expect(2) = 1e-53
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = -2

Query: 974 VQISAGFMIFFSIL 933
           +Q++AGFMIFFSIL
Sbjct: 374 IQVAAGFMIFFSIL 387


>sp|P93039|NAT4_ARATH Nucleobase-ascorbate transporter 4
           OS=Arabidopsis thaliana GN=NAT4 PE=2 SV=2
          Length = 526

 Score =  202 bits (514), Expect(2) = 3e-53
 Identities = 97/156 (62%), Positives = 118/156 (75%)
 Frame = -3

Query: 949 YSSLFWKIWSCLCIIPAPIFAALYCVFFAYVDSAGLGFPQFCNLNSFRTKFILEFSLFLG 770
           + S+F K  + L  IP PIFAALYCV FAYV SAGLG  QFCNLNSFR KFIL FS+F+G
Sbjct: 370 FFSIFGKFGAVLASIPLPIFAALYCVLFAYVASAGLGLLQFCNLNSFRNKFILGFSIFIG 429

Query: 769 LSIPQYFNEYTSVAGFGPVHTRARWFNDMVNVLFSSKAFVGGIVAYVLDNTLHRHEATVR 590
           LS+ QYF EY  ++G GPVHTR   FN ++ V+FSS A VG + A++LD T     A+VR
Sbjct: 430 LSVAQYFTEYLFISGRGPVHTRTSAFNVIMQVIFSSAATVGIMAAFLLDCTHSYGHASVR 489

Query: 589 KDRGYHWWDKFRSYRTDTRSEEFYSLPFNLNKFFPS 482
           +D G HWW+KFR Y TDTR+EEFY+LP+NLN+FFPS
Sbjct: 490 RDSGRHWWEKFRVYHTDTRTEEFYALPYNLNRFFPS 525



 Score = 28.5 bits (62), Expect(2) = 3e-53
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -2

Query: 974 VQISAGFMIFFSI 936
           VQISAGFMIFFSI
Sbjct: 361 VQISAGFMIFFSI 373


>sp|Q41760|LPE1_MAIZE Nucleobase-ascorbate transporter LPE1 OS=Zea
           mays GN=LPE1 PE=1 SV=2
          Length = 527

 Score =  195 bits (495), Expect = 5e-49
 Identities = 100/169 (59%), Positives = 120/169 (71%), Gaps = 1/169 (0%)
 Frame = -3

Query: 982 RRVCRYQ-LVL*YSSLFWKIWSCLCIIPAPIFAALYCVFFAYVDSAGLGFPQFCNLNSFR 806
           RRV +   L + + SLF K  + L  IP PIFAALYCV FAY   AG    Q+CNLNS R
Sbjct: 359 RRVIKISALFMIFFSLFAKFGAVLASIPLPIFAALYCVLFAYSAGAGFSLLQYCNLNSLR 418

Query: 805 TKFILEFSLFLGLSIPQYFNEYTSVAGFGPVHTRARWFNDMVNVLFSSKAFVGGIVAYVL 626
           TKFIL  SLFLGLSIPQYF  Y    GFGPVHT +  FN MVNV+FSS A V  I+AY+L
Sbjct: 419 TKFILSISLFLGLSIPQYFRVYEMFFGFGPVHTHSVAFNVMVNVIFSSPATVAAILAYLL 478

Query: 625 DNTLHRHEATVRKDRGYHWWDKFRSYRTDTRSEEFYSLPFNLNKFFPSV 479
           D T    EA+V+KDRG+ WW+KF+SY+ D RSEEFY LP+ L+++FPS+
Sbjct: 479 DCTHLYWEASVKKDRGWFWWEKFKSYKYDGRSEEFYRLPYGLSRYFPSL 527